Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12115987	1.00[MEX][hapmap]
rs1321386	1.00[MEX][hapmap]
rs16984676	1.00[MEX][hapmap]
rs16984695	1.00[MEX][hapmap]
rs16984753	1.00[MEX][hapmap]
rs16984771	1.00[MEX][hapmap]
rs16984773	1.00[MEX][hapmap]
rs17003891	1.00[MEX][hapmap]
rs1736868	0.87[YRI][hapmap]
rs2001044	1.00[MEX][hapmap]
rs5916735	1.00[MEX][hapmap]
rs5962290	1.00[MEX][hapmap]
rs5962539	1.00[MEX][hapmap]
rs5962540	1.00[MEX][hapmap]
rs6418240	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6523836	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6523837	0.91[YRI][hapmap]
rs6523846	1.00[MEX][hapmap]
rs6621959	0.91[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap]
rs6621962	1.00[YRI][hapmap]
rs6652396	0.81[YRI][hapmap]
rs6652398	1.00[MEX][hapmap]
rs6652926	1.00[MEX][hapmap]
rs7056795	1.00[MEX][hapmap]
rs7056995	1.00[MEX][hapmap]
rs7876119	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs7876229	1.00[MEX][hapmap]
rs7879161	1.00[MEX][hapmap]
rs7881915	1.00[MEX][hapmap]
rs7892424	1.00[MEX][hapmap]
rs9785562	1.00[MEX][hapmap]
rs988214	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104568000-104570000	Enhancers	Hela-S3	cervix
2	chrX:104568800-104569600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chrX:104569000-104569600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chrX:104569200-104569600	Active TSS	NHEK	skin
5	chrX:104569200-104570400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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