Variant report

Variant	rs6652926
Chromosome Location	chrX:104755492-104755493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12115987	1.00[MEX][hapmap]
rs1321386	1.00[MEX][hapmap]
rs16984753	1.00[MEX][hapmap]
rs16984771	1.00[MEX][hapmap]
rs16984773	1.00[MEX][hapmap]
rs2001044	1.00[MEX][hapmap]
rs5916735	1.00[MEX][hapmap]
rs5962290	1.00[MEX][hapmap]
rs5962539	1.00[MEX][hapmap]
rs5962540	1.00[MEX][hapmap]
rs6418240	1.00[MEX][hapmap]
rs6523836	1.00[MEX][hapmap]
rs6523846	1.00[MEX][hapmap]
rs6652398	1.00[MEX][hapmap]
rs7056795	1.00[MEX][hapmap]
rs7876119	1.00[MEX][hapmap]
rs7876229	1.00[MEX][hapmap]
rs7877795	1.00[MEX][hapmap]
rs7879161	1.00[MEX][hapmap]
rs7886649	1.00[MEX][hapmap]
rs7892424	1.00[MEX][hapmap]
rs9785562	1.00[MEX][hapmap]
rs988214	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104747800-104758200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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