Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12115987	1.00[MEX][hapmap]
rs1406992	0.82[LWK][hapmap];0.82[MKK][hapmap]
rs16984676	1.00[MEX][hapmap]
rs16984695	1.00[MEX][hapmap]
rs16984753	1.00[MEX][hapmap]
rs16984771	1.00[MEX][hapmap]
rs16984773	1.00[MEX][hapmap]
rs17003891	1.00[MEX][hapmap]
rs2001044	1.00[MEX][hapmap]
rs5916735	1.00[MEX][hapmap]
rs5916893	0.82[LWK][hapmap]
rs5962290	1.00[MEX][hapmap]
rs5962539	1.00[MEX][hapmap]
rs5962540	1.00[MEX][hapmap]
rs6418240	1.00[MEX][hapmap]
rs6523836	1.00[MEX][hapmap]
rs6523846	0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs6621959	1.00[MEX][hapmap]
rs6652398	0.83[ASW][hapmap];1.00[MEX][hapmap]
rs6652926	1.00[MEX][hapmap]
rs7056795	1.00[MEX][hapmap]
rs7056995	1.00[MEX][hapmap]
rs7876119	1.00[MEX][hapmap]
rs7876229	0.83[ASW][hapmap];1.00[MEX][hapmap]
rs7879161	1.00[MEX][hapmap]
rs7881915	1.00[MEX][hapmap]
rs7886649	1.00[MEX][hapmap]
rs7892424	1.00[MEX][hapmap]
rs9785562	1.00[MEX][hapmap]
rs988214	0.83[ASW][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104559400-104561600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chrX:104559800-104561800	Enhancers	Hela-S3	cervix
3	chrX:104560600-104561400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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