Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1321386	1.00[MEX][hapmap]
rs16984676	0.84[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap]
rs16984753	0.84[ASW][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap]
rs16984771	0.84[ASW][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap]
rs16984773	1.00[MEX][hapmap]
rs17003891	0.84[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap]
rs5962290	1.00[MEX][hapmap]
rs6418240	1.00[MEX][hapmap]
rs6523836	1.00[MEX][hapmap]
rs6523846	1.00[MEX][hapmap]
rs6621956	0.93[YRI][hapmap]
rs6621959	1.00[MEX][hapmap]
rs6652398	1.00[MEX][hapmap]
rs7056795	1.00[MEX][hapmap]
rs7056995	0.84[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.93[YRI][hapmap]
rs7876119	1.00[MEX][hapmap]
rs7876229	1.00[MEX][hapmap]
rs7879161	1.00[MEX][hapmap]
rs7881915	1.00[MEX][hapmap]
rs7886649	1.00[MEX][hapmap]
rs988214	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104542400-104547200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chrX:104543200-104544800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chrX:104543200-104545600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chrX:104543400-104544800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chrX:104543400-104544800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chrX:104543800-104544800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chrX:104543800-104545400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chrX:104544200-104544800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chrX:104544600-104545400	Enhancers	H1 Cell Line	embryonic stem cell
10	chrX:104544600-104545400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chrX:104544600-104545600	Enhancers	H9 Cell Line	embryonic stem cell

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