Variant report

Variant	rs5962536
Chromosome Location	chrX:104724489-104724490
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1154791	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1156923	1.00[CHB][hapmap]
rs12012976	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12115987	0.80[ASW][hapmap]
rs1321380	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs1321381	1.00[CHB][hapmap]
rs1321382	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[TSI][hapmap]
rs1321383	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[TSI][hapmap]
rs1321385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[YRI][hapmap]
rs1321388	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1406992	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs1590197	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs16984773	0.80[ASW][hapmap]
rs16984799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs16984800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs16984807	1.00[CEU][hapmap]
rs1736867	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs1736868	1.00[CEU][hapmap];0.87[CHD][hapmap]
rs1741710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1741712	1.00[CEU][hapmap];0.87[CHD][hapmap]
rs1741713	1.00[CEU][hapmap];0.87[CHD][hapmap]
rs1741715	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2001044	0.80[ASW][hapmap]
rs210547	0.87[CHD][hapmap]
rs210549	0.87[CHD][hapmap]
rs210726	0.82[CHB][hapmap]
rs210729	0.82[CHB][hapmap]
rs210734	0.82[CHB][hapmap]
rs2213338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap]
rs222582	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs222584	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs222585	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs222597	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs222599	1.00[CHB][hapmap]
rs222601	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2752572	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2752573	1.00[CEU][hapmap];0.87[CHD][hapmap]
rs2752574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]
rs2858229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[YRI][hapmap]
rs400761	0.87[CHD][hapmap]
rs448592	0.87[CHD][hapmap]
rs4826920	1.00[CHB][hapmap]
rs5916735	0.80[ASW][hapmap]
rs5916893	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs5916899	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs5916903	1.00[CHB][hapmap]
rs5916928	0.82[CHB][hapmap]
rs5962502	1.00[CHB][hapmap]
rs5962539	0.80[ASW][hapmap]
rs5962540	0.80[ASW][hapmap]
rs6523840	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6616582	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7050641	1.00[CEU][hapmap]
rs7879161	0.80[ASW][hapmap]
rs7880209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]
rs7892424	0.80[ASW][hapmap]
rs9785562	0.80[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104720200-104726400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chrX:104722400-104724800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chrX:104722400-104724800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chrX:104722600-104724600	Weak transcription	HMEC	breast
5	chrX:104722600-104724600	Weak transcription	NHEK	skin
6	chrX:104724000-104725400	Enhancers	Fetal Heart	heart
7	chrX:104724400-104727800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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