Variant report

Variant	rs1736867
Chromosome Location	chrX:104557116-104557117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1154791	0.87[CHD][hapmap];0.90[GIH][hapmap]
rs1321380	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap]
rs1321381	1.00[CEU][hapmap]
rs1321382	0.87[CHD][hapmap];0.90[GIH][hapmap]
rs1321383	0.87[CHD][hapmap];0.90[GIH][hapmap]
rs1321385	1.00[CHD][hapmap];0.90[GIH][hapmap]
rs1321388	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs1406992	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap]
rs1590197	1.00[CHB][hapmap]
rs1736868	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1741710	0.87[CHD][hapmap];0.90[GIH][hapmap]
rs1741712	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1741713	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1741715	1.00[CHB][hapmap]
rs222582	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs222584	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs222585	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs222588	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap]
rs222597	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs222601	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs2752573	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs2752574	0.87[CHD][hapmap]
rs2858229	0.87[CHD][hapmap];0.90[GIH][hapmap]
rs4826920	1.00[CEU][hapmap]
rs5916893	1.00[CHD][hapmap]
rs5916899	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5916903	1.00[CEU][hapmap]
rs5916911	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5962502	1.00[CHB][hapmap]
rs5962536	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs6523840	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs6616582	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs7880209	0.87[CHD][hapmap];0.90[GIH][hapmap]
rs980736	1.00[CHB][hapmap]
rs986468	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104553000-104557800	Weak transcription	NHEK	skin
2	chrX:104556600-104557400	Enhancers	HUVEC	blood vessel
3	chrX:104556800-104559400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chrX:104557000-104557200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chrX:104557000-104557800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chrX:104557000-104559000	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links