Variant report

Variant	rs6616582
Chromosome Location	chrX:104612762-104612763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1154791	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs1156923	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12012976	1.00[CHB][hapmap]
rs1321380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap]
rs1321381	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1321382	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs1321383	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs1321385	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs1321388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1321389	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs1358794	0.92[ASW][hapmap];0.94[LWK][hapmap];0.86[MKK][hapmap];0.95[YRI][hapmap]
rs1358795	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs1406992	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs1406993	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs1590197	1.00[CHB][hapmap]
rs16984714	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs16984717	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs16984733	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs16984799	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs16984800	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17003893	0.85[ASW][hapmap];0.80[LWK][hapmap]
rs1736867	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs1736868	0.87[CHD][hapmap]
rs1741710	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs1741712	0.87[CHD][hapmap]
rs1741713	0.87[CHD][hapmap]
rs2213338	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs222582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs222584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs222585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs222588	1.00[CEU][hapmap];0.89[GIH][hapmap]
rs222597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs222599	1.00[CHB][hapmap]
rs222601	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2752572	1.00[CHB][hapmap]
rs2752573	0.87[CHD][hapmap]
rs2752574	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs2858229	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs4826920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5916893	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs5916899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5916903	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5916911	1.00[CEU][hapmap]
rs5916928	0.82[CHB][hapmap]
rs5962502	1.00[CHB][hapmap]
rs5962536	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6523838	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs6523840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6652921	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs7049911	0.92[ASW][hapmap];0.94[LWK][hapmap];0.95[YRI][hapmap]
rs7052978	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs7063939	0.85[ASW][hapmap];0.81[LWK][hapmap]
rs7880209	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs986468	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104607000-104620600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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