Variant report

Variant	rs1321382
Chromosome Location	chrX:104527059-104527060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1154791	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap]
rs12394678	1.00[CEU][hapmap]
rs12397034	1.00[CEU][hapmap]
rs1292798	1.00[CEU][hapmap]
rs1321380	1.00[CHB][hapmap];0.90[GIH][hapmap]
rs1321381	1.00[CHB][hapmap]
rs1321383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1321385	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap]
rs1321388	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs1406992	0.87[CHD][hapmap];0.90[GIH][hapmap]
rs1590197	1.00[CHB][hapmap]
rs16984666	1.00[CEU][hapmap]
rs1736867	0.87[CHD][hapmap];0.90[GIH][hapmap]
rs1736868	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap]
rs1741710	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap]
rs1741712	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap]
rs1741713	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.90[MKK][hapmap]
rs1741715	1.00[CEU][hapmap]
rs2213327	1.00[CEU][hapmap]
rs2213419	1.00[CEU][hapmap]
rs222582	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs222584	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs222585	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs222588	0.87[CHD][hapmap]
rs222597	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs222599	1.00[CHB][hapmap]
rs222601	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs2227061	1.00[CEU][hapmap]
rs2392688	1.00[CEU][hapmap]
rs2752572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2752573	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs2752574	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs2858229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap]
rs4826920	1.00[CHB][hapmap]
rs5916893	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs5916899	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs5916903	1.00[CHB][hapmap]
rs5962268	1.00[CEU][hapmap]
rs5962476	1.00[CEU][hapmap]
rs5962477	1.00[CEU][hapmap]
rs5962481	1.00[CEU][hapmap]
rs5962486	1.00[CEU][hapmap]
rs5962492	1.00[CEU][hapmap]
rs5962497	1.00[CEU][hapmap]
rs5962502	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5962536	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[TSI][hapmap]
rs6418239	1.00[CEU][hapmap]
rs6523832	1.00[CEU][hapmap]
rs6523840	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs6616582	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap]
rs7063177	1.00[CEU][hapmap]
rs7064331	1.00[CEU][hapmap]
rs736637	1.00[CEU][hapmap]
rs7880209	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MKK][hapmap]
rs986468	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104526200-104527800	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links