Variant report

Variant	rs5962268
Chromosome Location	chrX:104494646-104494647
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1154791	1.00[CEU][hapmap]
rs12394678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12397034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1292798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1321382	1.00[CEU][hapmap]
rs1321383	1.00[CEU][hapmap]
rs1321385	1.00[CEU][hapmap]
rs16984666	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1736868	1.00[CEU][hapmap]
rs1741710	1.00[CEU][hapmap]
rs1741712	1.00[CEU][hapmap]
rs1741713	1.00[CEU][hapmap]
rs1741715	1.00[CEU][hapmap]
rs2213327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2213419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2227061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2392688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2752572	1.00[CEU][hapmap]
rs2752573	1.00[CEU][hapmap]
rs2752574	1.00[CEU][hapmap]
rs2858229	1.00[CEU][hapmap]
rs5962476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5962477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5962481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5962486	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs5962492	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs5962497	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6418239	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6523832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs7063177	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7064331	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs736637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7880209	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links