Variant report

Variant	rs1321385
Chromosome Location	chrX:104559005-104559006
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11092531	1.00[YRI][hapmap]
rs1154791	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap]
rs12394678	1.00[CEU][hapmap]
rs12397034	1.00[CEU][hapmap]
rs1292798	1.00[CEU][hapmap]
rs1321380	1.00[CHB][hapmap];0.90[GIH][hapmap]
rs1321381	1.00[CHB][hapmap]
rs1321382	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap]
rs1321383	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap]
rs1321388	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs1406992	1.00[CHD][hapmap];0.90[GIH][hapmap]
rs1590197	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs16984666	1.00[CEU][hapmap]
rs1736867	1.00[CHD][hapmap];0.90[GIH][hapmap]
rs1736868	1.00[CEU][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap]
rs1741710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap]
rs1741712	1.00[CEU][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap]
rs1741713	1.00[CEU][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap]
rs1741715	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2213327	1.00[CEU][hapmap]
rs2213419	1.00[CEU][hapmap]
rs222582	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs222584	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs222585	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs222597	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs222599	1.00[CHB][hapmap]
rs222601	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs2227061	1.00[CEU][hapmap]
rs2392688	1.00[CEU][hapmap]
rs2752572	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2752573	1.00[CEU][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs2752574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs2858229	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4826914	1.00[YRI][hapmap]
rs4826915	1.00[YRI][hapmap]
rs4826916	1.00[YRI][hapmap]
rs4826920	1.00[CHB][hapmap]
rs5916729	1.00[YRI][hapmap]
rs5916730	1.00[YRI][hapmap]
rs5916731	1.00[YRI][hapmap]
rs5916873	1.00[YRI][hapmap]
rs5916893	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs5916899	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs5916903	1.00[CHB][hapmap]
rs5962268	1.00[CEU][hapmap]
rs5962476	1.00[CEU][hapmap]
rs5962477	1.00[CEU][hapmap]
rs5962481	1.00[CEU][hapmap]
rs5962486	1.00[CEU][hapmap]
rs5962492	1.00[CEU][hapmap]
rs5962497	1.00[CEU][hapmap]
rs5962502	1.00[CHB][hapmap]
rs5962536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[YRI][hapmap]
rs6418239	1.00[CEU][hapmap]
rs6523832	1.00[CEU][hapmap]
rs6523840	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs6616576	1.00[YRI][hapmap]
rs6616582	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap]
rs6621938	1.00[YRI][hapmap]
rs6621941	1.00[YRI][hapmap]
rs7063177	1.00[CEU][hapmap]
rs7064331	1.00[CEU][hapmap]
rs736637	1.00[CEU][hapmap]
rs7880209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap]
rs986468	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104556800-104559400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chrX:104557200-104559600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chrX:104557600-104559400	Active TSS	HMEC	breast
4	chrX:104558000-104559400	Flanking Active TSS	HUVEC	blood vessel
5	chrX:104558000-104560600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chrX:104558000-104560600	Enhancers	Muscle Satellite Cultured Cells	--
7	chrX:104558400-104559800	Flanking Active TSS	Hela-S3	cervix
8	chrX:104558800-104559200	Active TSS	NH-A	brain
9	chrX:104559000-104559200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chrX:104559000-104559400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chrX:104559000-104559400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chrX:104559000-104559400	Flanking Active TSS	NHEK	skin
13	chrX:104559000-104560200	Enhancers	Osteobl	bone

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