Variant report

Variant	rs5916731
Chromosome Location	chrX:104465974-104465975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SRF	chrX:104465931-104466559	MCF-7	breast:	n/a	n/a
2	SRF	chrX:104465877-104466534	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
TEX13A	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11092531	0.87[ASW][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs12840315	1.00[YRI][hapmap]
rs1321385	1.00[YRI][hapmap]
rs1590197	1.00[YRI][hapmap]
rs16984652	0.81[JPT][hapmap]
rs17285493	0.81[JPT][hapmap]
rs1741715	1.00[YRI][hapmap]
rs2392686	0.90[JPT][hapmap]
rs2858229	1.00[YRI][hapmap]
rs4826890	0.87[GIH][hapmap]
rs4826914	0.87[ASW][hapmap];0.83[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap]
rs4826915	0.87[ASW][hapmap];0.83[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs4826916	0.87[ASW][hapmap];0.83[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs5916723	0.87[ASW][hapmap];0.83[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs5916724	0.87[GIH][hapmap]
rs5916729	0.87[ASW][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs5916730	1.00[ASW][hapmap];0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs5916866	1.00[YRI][hapmap]
rs5916870	0.84[GIH][hapmap]
rs5916873	0.87[ASW][hapmap];1.00[YRI][hapmap]
rs5916887	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs6616564	1.00[YRI][hapmap]
rs6616565	0.87[GIH][hapmap]
rs6616567	0.87[ASW][hapmap];0.83[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs6616576	0.87[ASW][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6621920	1.00[YRI][hapmap]
rs6621930	0.87[GIH][hapmap]
rs6621938	0.87[ASW][hapmap];1.00[YRI][hapmap]
rs6621941	0.87[ASW][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6621944	0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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