Variant report
| Variant | rs12840315 |
|---|---|
| Chromosome Location | chrX:104334485-104334486 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11092531 | 1.00[YRI][hapmap] |
| rs2001046 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap] |
| rs2213340 | 0.95[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap] |
| rs2392623 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap] |
| rs4826914 | 1.00[YRI][hapmap] |
| rs4826915 | 1.00[YRI][hapmap] |
| rs4826916 | 1.00[YRI][hapmap] |
| rs5916718 | 0.94[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap] |
| rs5916723 | 1.00[YRI][hapmap] |
| rs5916729 | 1.00[YRI][hapmap] |
| rs5916730 | 1.00[YRI][hapmap] |
| rs5916731 | 1.00[YRI][hapmap] |
| rs5916853 | 0.94[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap] |
| rs5916855 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs5916860 | 0.94[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap] |
| rs5916862 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap] |
| rs5916865 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs5916873 | 1.00[YRI][hapmap] |
| rs5917191 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs5917192 | 0.94[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap] |
| rs5962456 | 0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap] |
| rs6616558 | 0.94[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap] |
| rs6616564 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6616567 | 1.00[YRI][hapmap] |
| rs6616570 | 0.81[JPT][hapmap] |
| rs6616576 | 1.00[YRI][hapmap] |
| rs6621920 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap] |
| rs6621926 | 0.92[CHB][hapmap] |
| rs6621938 | 1.00[YRI][hapmap] |
| rs6621941 | 1.00[YRI][hapmap] |
| rs985425 | 0.94[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916408 | chrX:103552340-104347979 | Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv2758580 | chrX:104303006-104415037 | Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv2758881 | chrX:104303006-104415037 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
