Variant report

Variant	rs5917191
Chromosome Location	chrX:104248354-104248355
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12840315	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2001046	0.92[CHB][hapmap]
rs2213340	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2392623	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs5916718	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs5916853	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs5916855	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5916860	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs5916862	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs5916865	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs5917192	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs5962456	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6616558	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6616564	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6621920	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs6621926	0.92[CHB][hapmap]
rs985425	0.92[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916408	chrX:103552340-104347979	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104241200-104248400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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