Variant report

Variant	rs6621926
Chromosome Location	chrX:104347066-104347067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11092531	0.81[JPT][hapmap]
rs12840315	0.92[CHB][hapmap]
rs1894447	0.81[JPT][hapmap]
rs2001046	0.84[CHB][hapmap];0.88[CHD][hapmap];0.91[TSI][hapmap]
rs2009995	0.81[JPT][hapmap]
rs2213340	0.92[CHB][hapmap]
rs2392623	0.84[CHB][hapmap];0.88[CHD][hapmap];0.94[TSI][hapmap]
rs4826890	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs4826914	0.81[JPT][hapmap]
rs4826915	0.81[JPT][hapmap]
rs4826916	0.81[JPT][hapmap]
rs5916718	0.84[CHB][hapmap];0.84[CHD][hapmap];0.84[LWK][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap]
rs5916723	0.81[JPT][hapmap]
rs5916724	0.81[JPT][hapmap]
rs5916853	0.84[CHB][hapmap];0.84[CHD][hapmap];0.88[TSI][hapmap]
rs5916855	0.92[CHB][hapmap];0.84[CHD][hapmap];0.91[TSI][hapmap]
rs5916860	0.84[CHB][hapmap];0.83[CHD][hapmap];0.91[TSI][hapmap]
rs5916862	0.84[CHB][hapmap];0.88[CHD][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap]
rs5916865	0.92[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.91[TSI][hapmap]
rs5916866	0.81[JPT][hapmap]
rs5916870	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs5916873	0.81[JPT][hapmap]
rs5916874	0.81[JPT][hapmap]
rs5916875	0.81[JPT][hapmap]
rs5916876	0.81[JPT][hapmap]
rs5917191	0.92[CHB][hapmap]
rs5917192	0.84[CHB][hapmap];0.84[CHD][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap]
rs5962456	0.84[CHB][hapmap]
rs5962466	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs5962469	0.81[JPT][hapmap]
rs6616558	0.84[CHB][hapmap];0.84[CHD][hapmap];0.91[TSI][hapmap]
rs6616564	0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[TSI][hapmap]
rs6616565	0.81[JPT][hapmap]
rs6616567	0.81[JPT][hapmap]
rs6616570	0.80[JPT][hapmap]
rs6621920	0.84[CHB][hapmap];0.88[CHD][hapmap];0.94[TSI][hapmap]
rs6621930	0.81[JPT][hapmap]
rs6621931	0.81[JPT][hapmap]
rs6621938	0.81[JPT][hapmap]
rs985425	0.84[CHB][hapmap];0.84[CHD][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916408	chrX:103552340-104347979	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2758580	chrX:104303006-104415037	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2758881	chrX:104303006-104415037	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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