Variant report

Variant	rs1894447
Chromosome Location	chrX:104413005-104413006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:104331567..104334480-chrX:104412138..104414483,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11092531	0.93[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs17332253	0.80[CEU][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap]
rs2009995	0.93[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs2392686	1.00[CEU][hapmap]
rs4826890	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4826914	0.93[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs4826915	0.93[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs4826916	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs5916723	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs5916724	0.87[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs5916729	0.87[CEU][hapmap]
rs5916865	0.81[JPT][hapmap]
rs5916866	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5916870	0.87[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs5916873	0.93[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs5916874	0.93[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap]
rs5916875	0.87[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs5916876	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs5962466	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs5962469	0.93[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs6616564	0.80[JPT][hapmap]
rs6616565	0.87[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs6616567	0.93[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs6616570	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6616576	0.87[CEU][hapmap]
rs6616577	1.00[LWK][hapmap]
rs6621926	0.81[JPT][hapmap]
rs6621930	0.87[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs6621931	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs6621938	0.93[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs6621941	0.87[CEU][hapmap]
rs6621944	0.80[CEU][hapmap]
rs6621952	1.00[LWK][hapmap];1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758580	chrX:104303006-104415037	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2758881	chrX:104303006-104415037	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104412600-104413400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chrX:104412600-104413600	Enhancers	HMEC	breast
3	chrX:104412800-104413400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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