Variant report

Variant	rs6621944
Chromosome Location	chrX:104456092-104456093
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12854780	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs16984652	0.81[JPT][hapmap]
rs17285493	0.81[JPT][hapmap]
rs1894447	0.80[CEU][hapmap]
rs2009995	0.82[GIH][hapmap]
rs2392686	0.80[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs4826915	0.85[GIH][hapmap]
rs4826916	0.85[GIH][hapmap]
rs5916729	0.81[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap]
rs5916730	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap]
rs5916731	0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap]
rs5916873	0.85[GIH][hapmap]
rs5916887	0.85[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap]
rs5962466	0.89[GIH][hapmap]
rs5962469	0.85[GIH][hapmap]
rs6616567	0.85[GIH][hapmap]
rs6616576	0.81[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap]
rs6621938	0.85[GIH][hapmap]
rs6621941	0.81[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links