Variant report

Variant	rs5916887
Chromosome Location	chrX:104468256-104468257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12854780	0.81[CHB][hapmap]
rs16984652	0.81[JPT][hapmap]
rs17285493	0.81[JPT][hapmap]
rs2392686	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4826890	0.83[GIH][hapmap]
rs5916724	0.83[GIH][hapmap]
rs5916729	0.81[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap]
rs5916730	0.81[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs5916731	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs5916870	0.87[GIH][hapmap]
rs6616565	0.83[GIH][hapmap]
rs6616576	0.81[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap]
rs6621930	0.83[GIH][hapmap]
rs6621941	0.81[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap]
rs6621944	0.85[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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