Variant report

Variant	rs17285493
Chromosome Location	chrX:104472224-104472225
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16984652	0.93[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs5916730	0.81[JPT][hapmap]
rs5916731	0.81[JPT][hapmap]
rs5916887	0.81[JPT][hapmap]
rs6616577	0.93[CEU][hapmap]
rs6621944	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104470800-104472800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chrX:104471400-104473200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chrX:104471600-104473600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chrX:104472200-104473000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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