Variant report

Variant	rs6616564
Chromosome Location	chrX:104328666-104328667
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11092531	1.00[YRI][hapmap]
rs12840315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1894447	0.80[JPT][hapmap]
rs2001046	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs2009995	0.80[JPT][hapmap]
rs2213340	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2392623	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs4826890	0.80[JPT][hapmap]
rs4826914	0.80[JPT][hapmap];1.00[YRI][hapmap]
rs4826915	0.80[JPT][hapmap];1.00[YRI][hapmap]
rs4826916	0.80[JPT][hapmap];1.00[YRI][hapmap]
rs5916718	0.95[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.97[TSI][hapmap]
rs5916723	0.80[JPT][hapmap];1.00[YRI][hapmap]
rs5916724	0.80[JPT][hapmap]
rs5916729	1.00[YRI][hapmap]
rs5916730	1.00[YRI][hapmap]
rs5916731	1.00[YRI][hapmap]
rs5916853	1.00[ASW][hapmap];0.95[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.87[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap]
rs5916855	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap]
rs5916860	1.00[ASW][hapmap];0.95[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.87[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap]
rs5916862	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs5916865	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap]
rs5916866	0.80[JPT][hapmap];1.00[YRI][hapmap]
rs5916870	0.80[JPT][hapmap]
rs5916873	0.80[JPT][hapmap];1.00[YRI][hapmap]
rs5916874	0.80[JPT][hapmap]
rs5916875	0.80[JPT][hapmap]
rs5916876	0.80[JPT][hapmap]
rs5917191	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs5917192	0.95[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.97[TSI][hapmap]
rs5962456	0.95[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]
rs5962466	0.80[JPT][hapmap]
rs5962469	0.80[JPT][hapmap]
rs6616558	0.95[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap]
rs6616565	0.80[JPT][hapmap]
rs6616567	0.80[JPT][hapmap];1.00[YRI][hapmap]
rs6616570	0.90[JPT][hapmap]
rs6616576	1.00[YRI][hapmap]
rs6621920	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6621926	0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[TSI][hapmap]
rs6621930	0.80[JPT][hapmap]
rs6621931	0.80[JPT][hapmap]
rs6621938	0.80[JPT][hapmap];1.00[YRI][hapmap]
rs6621941	1.00[YRI][hapmap]
rs985425	0.95[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916408	chrX:103552340-104347979	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2758580	chrX:104303006-104415037	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2758881	chrX:104303006-104415037	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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