Variant report
| Variant | rs1590197 |
|---|---|
| Chromosome Location | chrX:104542222-104542223 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:50)
| rs_ID | r2[population] |
|---|---|
| rs11092531 | 1.00[YRI][hapmap] |
| rs1154791 | 1.00[CHB][hapmap] |
| rs1321380 | 1.00[CHB][hapmap] |
| rs1321381 | 1.00[CHB][hapmap] |
| rs1321382 | 1.00[CHB][hapmap] |
| rs1321383 | 1.00[CHB][hapmap] |
| rs1321385 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs1321388 | 1.00[CHB][hapmap] |
| rs1736867 | 1.00[CHB][hapmap] |
| rs1736868 | 1.00[CHB][hapmap] |
| rs1741710 | 1.00[CHB][hapmap] |
| rs1741712 | 1.00[CHB][hapmap] |
| rs1741713 | 1.00[CHB][hapmap] |
| rs1741715 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs222582 | 1.00[CHB][hapmap] |
| rs222584 | 1.00[CHB][hapmap] |
| rs222585 | 1.00[CHB][hapmap] |
| rs222588 | 1.00[CHB][hapmap] |
| rs222597 | 1.00[CHB][hapmap] |
| rs222599 | 1.00[CHB][hapmap] |
| rs222601 | 1.00[CHB][hapmap] |
| rs2752572 | 1.00[CHB][hapmap] |
| rs2752573 | 1.00[CHB][hapmap] |
| rs2752574 | 1.00[CHB][hapmap] |
| rs2858229 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs4826914 | 1.00[YRI][hapmap] |
| rs4826915 | 1.00[YRI][hapmap] |
| rs4826916 | 1.00[YRI][hapmap] |
| rs4826920 | 1.00[CHB][hapmap] |
| rs5916723 | 1.00[YRI][hapmap] |
| rs5916729 | 1.00[YRI][hapmap] |
| rs5916730 | 1.00[YRI][hapmap] |
| rs5916731 | 1.00[YRI][hapmap] |
| rs5916866 | 1.00[YRI][hapmap] |
| rs5916873 | 1.00[YRI][hapmap] |
| rs5916893 | 1.00[CHB][hapmap] |
| rs5916899 | 1.00[CHB][hapmap] |
| rs5916903 | 1.00[CHB][hapmap] |
| rs5916911 | 1.00[CHB][hapmap] |
| rs5962502 | 1.00[CHB][hapmap] |
| rs5962536 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs6523840 | 1.00[CHB][hapmap] |
| rs6616567 | 1.00[YRI][hapmap] |
| rs6616576 | 1.00[YRI][hapmap] |
| rs6616582 | 1.00[CHB][hapmap] |
| rs6621938 | 1.00[YRI][hapmap] |
| rs6621941 | 1.00[YRI][hapmap] |
| rs7880209 | 1.00[CHB][hapmap] |
| rs980736 | 1.00[CHB][hapmap] |
| rs986468 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432352 | chrX:104346855-104831855 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:104541800-104542400 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 2 | chrX:104542200-104542400 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 3 | chrX:104542200-104543200 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
