Variant report

Variant	rs5962497
Chromosome Location	chrX:104505073-104505074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1154791	1.00[CEU][hapmap]
rs12394678	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap]
rs12397034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1292798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1321382	1.00[CEU][hapmap]
rs1321383	1.00[CEU][hapmap]
rs1321385	1.00[CEU][hapmap]
rs1321388	0.82[YRI][hapmap]
rs16984666	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[YRI][hapmap]
rs1736868	1.00[CEU][hapmap]
rs1741710	1.00[CEU][hapmap]
rs1741712	1.00[CEU][hapmap]
rs1741713	1.00[CEU][hapmap]
rs1741715	1.00[CEU][hapmap]
rs2213327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2213419	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2227061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap]
rs2392688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2752572	1.00[CEU][hapmap]
rs2752573	1.00[CEU][hapmap]
rs2752574	1.00[CEU][hapmap]
rs2858229	1.00[CEU][hapmap]
rs5962268	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5962476	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5962477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5962481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5962486	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs5962492	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6418239	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs6523832	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7063177	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs7064331	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[YRI][hapmap]
rs736637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs7880209	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104505000-104505400	Bivalent/Poised TSS	Adipose Nuclei	Adipose
2	chrX:104505000-104505400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chrX:104505000-104505400	Bivalent Enhancer	Placenta	Placenta
4	chrX:104505000-104505600	Enhancers	Ovary	ovary

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