Variant report

Variant	rs7049911
Chromosome Location	chrX:104618804-104618805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1321389	0.92[ASW][hapmap];0.86[LWK][hapmap];0.97[MKK][hapmap]
rs1358794	1.00[ASW][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs1358795	0.92[ASW][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap]
rs1406993	0.92[ASW][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap]
rs16984714	0.92[ASW][hapmap];0.86[LWK][hapmap];0.97[MKK][hapmap]
rs16984717	0.92[ASW][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap]
rs16984733	0.92[ASW][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap]
rs17003893	0.92[ASW][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap]
rs222601	0.92[ASW][hapmap];0.94[LWK][hapmap];0.95[YRI][hapmap]
rs4826920	0.95[YRI][hapmap]
rs6523838	0.92[ASW][hapmap];0.86[LWK][hapmap];0.97[MKK][hapmap]
rs6616582	0.92[ASW][hapmap];0.94[LWK][hapmap];0.95[YRI][hapmap]
rs6652921	0.92[ASW][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap]
rs7052978	0.92[ASW][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap]
rs7063939	0.92[ASW][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap]
rs7067174	0.97[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104607000-104620600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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