Variant report

Variant	rs5916928
Chromosome Location	chrX:104799273-104799274
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1156923	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12012976	0.82[CHB][hapmap]
rs1292802	1.00[YRI][hapmap]
rs1321380	0.82[CHB][hapmap]
rs1321381	0.82[CHB][hapmap]
rs16984799	0.82[CHB][hapmap]
rs16984800	0.82[CHB][hapmap]
rs210427	1.00[JPT][hapmap]
rs210428	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs210430	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs210433	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs210435	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs210437	1.00[JPT][hapmap]
rs210544	1.00[JPT][hapmap]
rs210545	1.00[JPT][hapmap]
rs210547	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs210548	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs210549	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs210554	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs210556	1.00[JPT][hapmap]
rs210726	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs210729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs210730	1.00[YRI][hapmap]
rs210731	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs210734	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2213338	0.82[CHB][hapmap]
rs222597	0.82[CHB][hapmap]
rs222599	0.82[CHB][hapmap]
rs222601	0.82[CHB][hapmap]
rs400761	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs440424	1.00[JPT][hapmap]
rs448592	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4826920	0.82[CHB][hapmap]
rs4826922	1.00[YRI][hapmap]
rs482764	1.00[JPT][hapmap]
rs5916899	0.82[CHB][hapmap]
rs5916903	0.82[CHB][hapmap]
rs5916908	1.00[YRI][hapmap]
rs5916911	1.00[YRI][hapmap]
rs5916929	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5962536	0.82[CHB][hapmap]
rs6523840	0.82[CHB][hapmap]
rs6616582	0.82[CHB][hapmap]
rs6621983	1.00[JPT][hapmap]
rs991444	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104796800-104799600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chrX:104798200-104805600	Weak transcription	HMEC	breast
3	chrX:104798200-104805600	Weak transcription	NHEK	skin
4	chrX:104799000-104807600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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