Variant report

Variant	rs6621983
Chromosome Location	chrX:104811805-104811806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11092541	0.85[CEU][hapmap]
rs11092542	0.81[CEU][hapmap]
rs1156923	1.00[JPT][hapmap]
rs11796771	0.95[CEU][hapmap]
rs11798133	0.85[CEU][hapmap];0.87[TSI][hapmap]
rs12388560	0.85[CEU][hapmap];0.91[TSI][hapmap]
rs12850418	1.00[CEU][hapmap]
rs17285535	0.95[CEU][hapmap];0.94[TSI][hapmap]
rs17343011	1.00[JPT][hapmap]
rs210427	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs210428	1.00[JPT][hapmap]
rs210429	0.81[CEU][hapmap]
rs210430	1.00[JPT][hapmap]
rs210431	0.81[CEU][hapmap];0.93[MEX][hapmap];0.85[TSI][hapmap]
rs210433	1.00[JPT][hapmap]
rs210435	1.00[JPT][hapmap]
rs210437	1.00[JPT][hapmap]
rs210544	0.85[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[YRI][hapmap]
rs210545	0.90[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs210547	1.00[JPT][hapmap]
rs210548	1.00[JPT][hapmap]
rs210549	1.00[JPT][hapmap]
rs210550	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap]
rs210554	1.00[JPT][hapmap]
rs210556	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs210726	1.00[JPT][hapmap]
rs210729	1.00[JPT][hapmap]
rs210731	1.00[JPT][hapmap]
rs210734	1.00[JPT][hapmap]
rs400000	0.92[ASW][hapmap];0.85[CEU][hapmap];0.95[LWK][hapmap];0.80[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs400761	1.00[JPT][hapmap]
rs440424	0.90[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.81[YRI][hapmap]
rs448592	1.00[JPT][hapmap]
rs452428	0.92[ASW][hapmap];0.85[CEU][hapmap];0.86[LWK][hapmap];0.80[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap]
rs482764	1.00[JPT][hapmap]
rs5916918	0.83[ASW][hapmap]
rs5916928	1.00[JPT][hapmap]
rs5916929	1.00[JPT][hapmap]
rs5916930	1.00[CEU][hapmap]
rs5916932	0.95[CEU][hapmap];0.80[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap]
rs5916933	0.85[CEU][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap]
rs5916935	0.85[CEU][hapmap];0.88[TSI][hapmap]
rs5916936	0.85[CEU][hapmap];0.88[TSI][hapmap]
rs5916938	0.85[CEU][hapmap];0.91[TSI][hapmap]
rs5916939	0.81[CEU][hapmap];0.88[TSI][hapmap]
rs5916940	0.81[CEU][hapmap];0.85[TSI][hapmap]
rs5916942	0.89[CEU][hapmap]
rs5916943	0.85[CEU][hapmap]
rs5962556	0.85[CEU][hapmap];0.88[TSI][hapmap]
rs5962558	0.85[CEU][hapmap]
rs5962569	0.81[CEU][hapmap];0.85[TSI][hapmap]
rs6621980	0.95[CEU][hapmap]
rs6621985	0.95[CEU][hapmap];0.97[TSI][hapmap]
rs7891183	0.81[CEU][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104808600-104814800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chrX:104810200-104814800	Weak transcription	HMEC	breast
3	chrX:104811000-104812000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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