Variant report

Variant	rs400000
Chromosome Location	chrX:104870262-104870263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10521506	1.00[JPT][hapmap]
rs11092541	1.00[CEU][hapmap]
rs11092542	0.95[CEU][hapmap]
rs11796771	0.90[CEU][hapmap]
rs11798133	1.00[CEU][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap]
rs12388560	1.00[CEU][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs12845381	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs12850418	0.85[CEU][hapmap]
rs17285535	0.90[CEU][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs210427	0.90[CEU][hapmap]
rs210429	0.95[CEU][hapmap]
rs210431	0.95[CEU][hapmap];0.93[CHB][hapmap];0.90[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs210432	0.87[GIH][hapmap];0.80[MEX][hapmap]
rs210544	1.00[CEU][hapmap];0.80[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap]
rs210545	1.00[CEU][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap]
rs210550	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap]
rs210556	0.95[CEU][hapmap]
rs4345709	0.84[CHD][hapmap];1.00[JPT][hapmap]
rs440424	0.95[CEU][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap]
rs452428	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs5916736	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5916737	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5916918	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5916919	1.00[JPT][hapmap]
rs5916922	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5916923	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5916930	0.85[CEU][hapmap]
rs5916932	0.90[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs5916933	1.00[CEU][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap]
rs5916935	1.00[CEU][hapmap];0.97[TSI][hapmap]
rs5916936	1.00[CEU][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap]
rs5916938	1.00[CEU][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs5916939	0.95[CEU][hapmap];0.91[TSI][hapmap]
rs5916940	0.95[CEU][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]
rs5916942	0.94[CEU][hapmap];0.86[MEX][hapmap]
rs5916943	0.90[CEU][hapmap]
rs5962292	1.00[JPT][hapmap]
rs5962542	0.84[CHD][hapmap];1.00[JPT][hapmap]
rs5962549	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5962556	1.00[CEU][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap]
rs5962558	1.00[CEU][hapmap]
rs5962569	0.95[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs6621980	0.90[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6621983	0.92[ASW][hapmap];0.85[CEU][hapmap];0.95[LWK][hapmap];0.80[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs6621985	0.90[CEU][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]
rs7891183	0.95[CEU][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104864200-104876800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chrX:104870200-104870400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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