Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11092541	0.86[CEU][hapmap]
rs11092542	0.81[CEU][hapmap]
rs11796771	0.95[CEU][hapmap];0.94[YRI][hapmap]
rs11798133	0.85[CEU][hapmap]
rs12388560	0.85[CEU][hapmap];0.86[YRI][hapmap]
rs12850418	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap]
rs17285535	0.95[CEU][hapmap]
rs210427	0.86[CEU][hapmap]
rs210429	0.81[CEU][hapmap]
rs210431	0.80[CEU][hapmap]
rs210544	0.85[CEU][hapmap]
rs210545	0.89[CEU][hapmap]
rs210550	0.83[CEU][hapmap]
rs210556	0.81[CEU][hapmap]
rs400000	0.85[CEU][hapmap]
rs440424	0.90[CEU][hapmap]
rs452428	0.85[CEU][hapmap]
rs5916932	0.95[CEU][hapmap]
rs5916933	0.85[CEU][hapmap];0.93[YRI][hapmap]
rs5916935	0.84[CEU][hapmap];0.80[YRI][hapmap]
rs5916936	0.85[CEU][hapmap]
rs5916938	0.85[CEU][hapmap];0.86[YRI][hapmap]
rs5916939	0.80[CEU][hapmap]
rs5916940	0.80[CEU][hapmap]
rs5916942	0.89[CEU][hapmap]
rs5916943	0.86[CEU][hapmap]
rs5962556	0.85[CEU][hapmap]
rs5962558	0.86[CEU][hapmap];0.94[YRI][hapmap]
rs5962569	0.80[CEU][hapmap]
rs6621980	0.95[CEU][hapmap]
rs6621983	1.00[CEU][hapmap]
rs6621985	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs7891183	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104799000-104807600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chrX:104805400-104806200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
3	chrX:104805600-104806400	Enhancers	HMEC	breast
4	chrX:104805600-104806800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chrX:104805800-104807600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chrX:104806000-104807800	Weak transcription	NHEK	skin

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