Variant report

Variant	rs5916935
Chromosome Location	chrX:104881512-104881513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10218388	0.83[GIH][hapmap]
rs11092541	1.00[CEU][hapmap]
rs11092542	0.95[CEU][hapmap];0.80[YRI][hapmap]
rs11796771	0.90[CEU][hapmap];0.87[YRI][hapmap]
rs11798133	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[TSI][hapmap]
rs12388560	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap]
rs12850418	0.85[CEU][hapmap];0.80[YRI][hapmap]
rs17285535	0.90[CEU][hapmap];0.96[GIH][hapmap];0.82[LWK][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap]
rs210427	0.90[CEU][hapmap]
rs210429	0.95[CEU][hapmap]
rs210431	0.95[CEU][hapmap];0.81[GIH][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap]
rs210544	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs210545	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs210550	0.89[CEU][hapmap];0.91[TSI][hapmap]
rs210556	0.95[CEU][hapmap]
rs400000	1.00[CEU][hapmap];0.97[TSI][hapmap]
rs440424	0.95[CEU][hapmap];0.94[TSI][hapmap]
rs452428	1.00[CEU][hapmap];0.97[TSI][hapmap]
rs5916930	0.84[CEU][hapmap];0.80[YRI][hapmap]
rs5916932	0.90[CEU][hapmap];0.94[TSI][hapmap]
rs5916933	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.87[YRI][hapmap]
rs5916936	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs5916938	0.88[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.94[LWK][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap]
rs5916939	0.95[CEU][hapmap];0.81[CHD][hapmap];0.94[TSI][hapmap]
rs5916940	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap]
rs5916942	0.87[ASW][hapmap];0.94[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap]
rs5916943	0.90[CEU][hapmap];0.87[YRI][hapmap]
rs5962556	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap]
rs5962558	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs5962569	0.95[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap]
rs5962575	0.83[GIH][hapmap]
rs6621980	0.90[CEU][hapmap]
rs6621983	0.85[CEU][hapmap];0.88[TSI][hapmap]
rs6621985	0.88[ASW][hapmap];0.90[CEU][hapmap];0.93[GIH][hapmap];0.88[LWK][hapmap];0.91[TSI][hapmap];0.80[YRI][hapmap]
rs7891183	0.95[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104877200-104881800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chrX:104877600-104882400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chrX:104877600-104882600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chrX:104878000-104881800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chrX:104878400-104882200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chrX:104879000-104881800	Enhancers	Hela-S3	cervix
7	chrX:104879200-104881800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chrX:104880000-104881800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chrX:104880800-104882200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chrX:104881200-104882200	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links