Variant report

Variant	rs5916932
Chromosome Location	chrX:104816403-104816404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10521506	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11092541	0.90[CEU][hapmap]
rs11092542	0.85[CEU][hapmap]
rs11796771	1.00[CEU][hapmap]
rs11798133	0.90[CEU][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]
rs12388560	0.90[CEU][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs12845381	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs12850418	0.95[CEU][hapmap]
rs17285535	1.00[CEU][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs210429	0.85[CEU][hapmap]
rs210431	0.85[CEU][hapmap];0.87[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs210432	0.81[ASW][hapmap];0.84[GIH][hapmap];0.80[MEX][hapmap]
rs210544	1.00[ASW][hapmap];0.90[CEU][hapmap];0.80[MEX][hapmap];0.84[MKK][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap]
rs210545	1.00[ASW][hapmap];0.90[CEU][hapmap];0.84[MKK][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap]
rs210550	0.81[ASW][hapmap];0.85[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.85[TSI][hapmap]
rs210556	0.85[CEU][hapmap]
rs400000	0.90[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs4345709	0.85[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs440424	1.00[ASW][hapmap];0.85[CEU][hapmap];0.80[MEX][hapmap];0.87[MKK][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap]
rs452428	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap]
rs5916736	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5916737	0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5916918	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5916919	1.00[JPT][hapmap]
rs5916922	0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5916923	0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5916930	0.95[CEU][hapmap]
rs5916933	0.90[CEU][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap]
rs5916935	0.90[CEU][hapmap];0.94[TSI][hapmap]
rs5916936	0.90[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs5916938	0.90[CEU][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs5916939	0.85[CEU][hapmap];0.88[TSI][hapmap]
rs5916940	0.85[CEU][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs5916942	0.89[CEU][hapmap];0.86[MEX][hapmap]
rs5962292	1.00[JPT][hapmap]
rs5962542	0.84[CHD][hapmap];1.00[JPT][hapmap]
rs5962549	0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5962556	0.90[CEU][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]
rs5962558	0.90[CEU][hapmap]
rs5962569	0.85[CEU][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs6621980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6621983	0.95[CEU][hapmap];0.80[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap]
rs6621985	1.00[CEU][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap]
rs7891183	0.85[CEU][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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