Variant report

Variant	rs12388560
Chromosome Location	chrX:104890141-104890142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11092541	1.00[CEU][hapmap]
rs11092542	0.95[CEU][hapmap];0.86[YRI][hapmap]
rs11796771	0.90[CEU][hapmap];0.80[YRI][hapmap]
rs11798133	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs12850418	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[YRI][hapmap]
rs17285535	0.90[CEU][hapmap];0.93[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap]
rs210427	0.90[CEU][hapmap]
rs210429	0.95[CEU][hapmap]
rs210431	0.95[CEU][hapmap];0.94[TSI][hapmap]
rs210544	1.00[CEU][hapmap];0.97[TSI][hapmap]
rs210545	1.00[CEU][hapmap];0.97[TSI][hapmap]
rs210550	0.89[CEU][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap]
rs210556	0.95[CEU][hapmap]
rs400000	1.00[CEU][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs440424	0.95[CEU][hapmap];0.97[TSI][hapmap]
rs452428	1.00[CEU][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs5916930	0.85[CEU][hapmap];0.86[YRI][hapmap]
rs5916932	0.90[CEU][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs5916933	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap]
rs5916935	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap]
rs5916936	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.88[LWK][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap]
rs5916938	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5916939	0.95[CEU][hapmap];0.88[CHD][hapmap];0.91[TSI][hapmap]
rs5916940	1.00[ASW][hapmap];0.95[CEU][hapmap];0.96[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap]
rs5916942	0.87[ASW][hapmap];0.94[CEU][hapmap];0.96[GIH][hapmap];0.82[LWK][hapmap];0.93[MEX][hapmap]
rs5916943	0.90[CEU][hapmap];0.93[YRI][hapmap]
rs5962556	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap]
rs5962558	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs5962569	0.95[CEU][hapmap];0.96[GIH][hapmap];0.82[LWK][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]
rs6621980	0.90[CEU][hapmap]
rs6621983	0.85[CEU][hapmap];0.91[TSI][hapmap]
rs6621985	0.88[ASW][hapmap];0.90[CEU][hapmap];0.96[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap]
rs7891183	0.95[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104887800-104890800	Weak transcription	Psoas Muscle	Psoas
2	chrX:104889200-104890200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chrX:104889400-104890400	Enhancers	NHEK	skin
4	chrX:104889400-104890800	Enhancers	HMEC	breast
5	chrX:104889400-104891800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chrX:104889600-104890400	Enhancers	Muscle Satellite Cultured Cells	--
7	chrX:104889600-104890800	Enhancers	HSMM	muscle
8	chrX:104889600-104891000	Enhancers	HSMMtube	muscle
9	chrX:104889800-104890200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chrX:104889800-104890200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
11	chrX:104889800-104892600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chrX:104890000-104890200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
13	chrX:104890000-104890400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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