Variant report

Variant	rs5962569
Chromosome Location	chrX:104943804-104943805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10218388	0.87[ASW][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs11092541	0.95[CEU][hapmap]
rs11092542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11796771	0.85[CEU][hapmap]
rs11798133	0.95[CEU][hapmap];0.80[CHB][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap]
rs12388560	0.95[CEU][hapmap];0.96[GIH][hapmap];0.82[LWK][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]
rs12850418	0.81[CEU][hapmap]
rs17285535	0.85[CEU][hapmap];0.96[GIH][hapmap];0.81[LWK][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs210427	0.95[CEU][hapmap]
rs210429	1.00[CEU][hapmap]
rs210431	1.00[CEU][hapmap];0.81[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs210544	0.95[CEU][hapmap];0.91[TSI][hapmap]
rs210545	0.95[CEU][hapmap];0.91[TSI][hapmap]
rs210550	0.94[CEU][hapmap];0.94[TSI][hapmap]
rs210556	1.00[CEU][hapmap]
rs400000	0.95[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs440424	0.90[CEU][hapmap];0.91[TSI][hapmap]
rs452428	0.95[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs5916930	0.80[CEU][hapmap]
rs5916932	0.85[CEU][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs5916933	0.95[CEU][hapmap];0.80[CHB][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap]
rs5916935	0.95[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap]
rs5916936	0.95[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap]
rs5916938	0.95[CEU][hapmap];0.80[CHB][hapmap];0.96[GIH][hapmap];0.82[LWK][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]
rs5916939	1.00[CEU][hapmap];0.97[TSI][hapmap]
rs5916940	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];0.93[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap]
rs5916942	0.87[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.92[YRI][hapmap]
rs5916943	0.95[CEU][hapmap]
rs5962556	0.95[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap]
rs5962558	0.95[CEU][hapmap]
rs5962575	0.87[ASW][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs6621980	0.85[CEU][hapmap]
rs6621983	0.81[CEU][hapmap];0.85[TSI][hapmap]
rs6621985	0.85[CEU][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap]
rs7891183	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417977	chrX:104943745-104944239	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104939000-104946600	Enhancers	Hela-S3	cervix
2	chrX:104940200-104945400	Weak transcription	NHEK	skin
3	chrX:104940400-104945000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chrX:104940400-104945200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chrX:104941400-104945400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chrX:104942200-104944800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chrX:104942600-104944000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chrX:104943200-104946000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chrX:104943400-104946200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chrX:104943600-104944000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chrX:104943800-104946200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chrX:104943800-104946400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chrX:104943800-104946400	Enhancers	HUES64 Cell Line	embryonic stem cell

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