Variant report

Variant	rs210545
Chromosome Location	chrX:104880023-104880024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:104879444..104881439-chrX:104903222..104905333,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11092541	1.00[CEU][hapmap]
rs11092542	0.95[CEU][hapmap]
rs1156923	1.00[JPT][hapmap]
rs11796771	0.90[CEU][hapmap]
rs11798133	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs12388560	1.00[CEU][hapmap];0.97[TSI][hapmap]
rs12850418	0.90[CEU][hapmap]
rs17285535	0.90[CEU][hapmap];0.88[TSI][hapmap]
rs17343011	1.00[JPT][hapmap]
rs17343018	1.00[JPT][hapmap]
rs210427	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs210428	1.00[JPT][hapmap]
rs210429	0.95[CEU][hapmap]
rs210430	1.00[JPT][hapmap]
rs210431	0.95[CEU][hapmap];0.91[TSI][hapmap]
rs210432	0.81[ASW][hapmap]
rs210433	1.00[JPT][hapmap]
rs210435	1.00[JPT][hapmap]
rs210437	1.00[JPT][hapmap]
rs210544	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs210547	1.00[JPT][hapmap]
rs210548	1.00[JPT][hapmap]
rs210549	1.00[JPT][hapmap]
rs210550	0.81[ASW][hapmap];0.94[CEU][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap]
rs210554	1.00[JPT][hapmap]
rs210556	0.95[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs210726	1.00[JPT][hapmap]
rs210729	1.00[JPT][hapmap]
rs210731	1.00[JPT][hapmap]
rs210734	1.00[JPT][hapmap]
rs400000	1.00[CEU][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap]
rs400761	1.00[JPT][hapmap]
rs440424	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs448592	1.00[JPT][hapmap]
rs452428	1.00[CEU][hapmap];0.97[TSI][hapmap]
rs482764	1.00[JPT][hapmap]
rs5916928	1.00[JPT][hapmap]
rs5916929	1.00[JPT][hapmap]
rs5916930	0.89[CEU][hapmap]
rs5916932	1.00[ASW][hapmap];0.90[CEU][hapmap];0.84[MKK][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap]
rs5916933	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs5916935	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs5916936	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs5916938	1.00[CEU][hapmap];0.97[TSI][hapmap]
rs5916939	0.95[CEU][hapmap];0.94[TSI][hapmap]
rs5916940	0.95[CEU][hapmap];0.91[TSI][hapmap]
rs5916942	0.94[CEU][hapmap]
rs5916943	0.95[CEU][hapmap]
rs5962556	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs5962558	1.00[CEU][hapmap]
rs5962569	0.95[CEU][hapmap];0.91[TSI][hapmap]
rs6621980	0.90[CEU][hapmap];0.92[YRI][hapmap]
rs6621983	0.90[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs6621985	0.90[CEU][hapmap];0.91[TSI][hapmap]
rs7891183	0.95[CEU][hapmap];0.91[TSI][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104874000-104880600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chrX:104876800-104880600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chrX:104877200-104881800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chrX:104877600-104882400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chrX:104877600-104882600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chrX:104878000-104881800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chrX:104878400-104882200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chrX:104879000-104881800	Enhancers	Hela-S3	cervix
9	chrX:104879200-104881800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chrX:104879600-104880800	Enhancers	HMEC	breast
11	chrX:104879800-104880600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chrX:104880000-104880200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chrX:104880000-104880400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chrX:104880000-104881800	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links