Variant report
| Variant | rs11796771 |
|---|---|
| Chromosome Location | chrX:104816729-104816730 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10521506 | 1.00[JPT][hapmap] |
| rs11092541 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11092542 | 0.86[CEU][hapmap] |
| rs11798133 | 0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs12388560 | 0.90[CEU][hapmap];0.80[YRI][hapmap] |
| rs12850418 | 0.95[CEU][hapmap];0.94[YRI][hapmap] |
| rs17285535 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap] |
| rs210427 | 0.81[CEU][hapmap] |
| rs210429 | 0.86[CEU][hapmap] |
| rs210431 | 0.85[CEU][hapmap] |
| rs210544 | 0.90[CEU][hapmap] |
| rs210545 | 0.90[CEU][hapmap] |
| rs210556 | 0.86[CEU][hapmap] |
| rs400000 | 0.90[CEU][hapmap] |
| rs440424 | 0.85[CEU][hapmap] |
| rs452428 | 0.90[CEU][hapmap] |
| rs5916930 | 0.95[CEU][hapmap];0.94[YRI][hapmap] |
| rs5916932 | 1.00[CEU][hapmap] |
| rs5916933 | 0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap] |
| rs5916935 | 0.90[CEU][hapmap];0.87[YRI][hapmap] |
| rs5916936 | 0.90[CEU][hapmap] |
| rs5916938 | 0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap] |
| rs5916939 | 0.85[CEU][hapmap] |
| rs5916940 | 0.85[CEU][hapmap];0.80[CHB][hapmap] |
| rs5916942 | 0.89[CEU][hapmap];0.80[CHB][hapmap] |
| rs5916943 | 0.81[CEU][hapmap] |
| rs5962556 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5962558 | 0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap] |
| rs5962569 | 0.85[CEU][hapmap] |
| rs6621980 | 1.00[CEU][hapmap] |
| rs6621983 | 0.95[CEU][hapmap] |
| rs6621985 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap] |
| rs7891183 | 0.85[CEU][hapmap];0.80[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432352 | chrX:104346855-104831855 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
