Variant report

Variant	rs10521506
Chromosome Location	chrX:104770109-104770110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11092541	1.00[JPT][hapmap]
rs11796771	1.00[JPT][hapmap]
rs11798133	1.00[JPT][hapmap]
rs12156709	1.00[JPT][hapmap]
rs12845381	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs17285535	1.00[JPT][hapmap]
rs400000	1.00[JPT][hapmap]
rs4345709	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap]
rs452428	1.00[JPT][hapmap]
rs5916736	0.95[CEU][hapmap];0.92[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5916737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs5916918	0.90[CEU][hapmap];0.84[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs5916919	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs5916922	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs5916923	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs5916932	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs5916933	1.00[JPT][hapmap]
rs5916938	1.00[JPT][hapmap]
rs5962292	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs5962542	0.95[CEU][hapmap];0.92[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5962549	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap]
rs5962556	1.00[JPT][hapmap]
rs5962558	1.00[JPT][hapmap]
rs6621980	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs6621985	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104769000-104770400	Weak transcription	HMEC	breast
2	chrX:104769000-104770400	Weak transcription	NHEK	skin
3	chrX:104769000-104771800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chrX:104769200-104771800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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