Variant report

Variant	rs5916922
Chromosome Location	chrX:104785859-104785860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10521506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs12845381	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1384360	0.81[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs210550	0.84[CHD][hapmap]
rs400000	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs4345709	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs452428	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5916736	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs5916737	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5916918	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs5916919	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs5916923	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5916932	0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5962292	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5962542	0.95[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs5962549	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs6621980	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs721953	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3348185	chrX:104784046-104786044	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104785400-104786200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chrX:104785400-104786200	Enhancers	HMEC	breast
3	chrX:104785400-104786400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chrX:104785400-104787600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chrX:104785400-104787600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chrX:104785400-104791400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chrX:104785600-104786000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chrX:104785600-104786000	Enhancers	NHEK	skin
9	chrX:104785600-104786200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chrX:104785600-104788800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chrX:104785600-104790800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chrX:104785800-104786200	Enhancers	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links