Variant report

Variant	rs1384360
Chromosome Location	chrX:104798316-104798317
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12845381	0.81[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs4345709	0.81[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs5916737	0.81[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs5916922	0.81[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs5916923	0.81[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs5962292	1.00[YRI][hapmap]
rs5962549	0.81[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs721953	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104796800-104799600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chrX:104797400-104798400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chrX:104798200-104805600	Weak transcription	HMEC	breast
4	chrX:104798200-104805600	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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