Variant report

Variant	rs6621985
Chromosome Location	chrX:104820554-104820555
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10218388	0.82[GIH][hapmap]
rs10521506	1.00[JPT][hapmap]
rs11092541	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11092542	0.85[CEU][hapmap]
rs11796771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs11798133	0.88[ASW][hapmap];0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap]
rs12388560	0.88[ASW][hapmap];0.90[CEU][hapmap];0.96[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap]
rs12850418	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs17285535	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs210429	0.85[CEU][hapmap]
rs210431	0.85[CEU][hapmap];0.88[TSI][hapmap]
rs210544	0.90[CEU][hapmap];0.91[TSI][hapmap]
rs210545	0.90[CEU][hapmap];0.91[TSI][hapmap]
rs210550	0.86[MEX][hapmap];0.81[TSI][hapmap]
rs210556	0.85[CEU][hapmap]
rs400000	0.90[CEU][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]
rs440424	0.85[CEU][hapmap];0.91[TSI][hapmap]
rs452428	0.90[CEU][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]
rs5916930	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs5916932	1.00[CEU][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap]
rs5916933	0.88[ASW][hapmap];0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap]
rs5916935	0.88[ASW][hapmap];0.90[CEU][hapmap];0.93[GIH][hapmap];0.88[LWK][hapmap];0.91[TSI][hapmap];0.80[YRI][hapmap]
rs5916936	0.88[ASW][hapmap];0.90[CEU][hapmap];0.93[GIH][hapmap];0.88[LWK][hapmap];0.93[MEX][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap]
rs5916938	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap]
rs5916939	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs5916940	0.88[ASW][hapmap];0.85[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs5916942	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap]
rs5962556	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs5962558	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs5962569	0.85[CEU][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap]
rs5962575	0.82[GIH][hapmap]
rs6621980	1.00[CEU][hapmap]
rs6621983	0.95[CEU][hapmap];0.97[TSI][hapmap]
rs7891183	0.85[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432352	chrX:104346855-104831855	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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