Variant report

Variant	rs10128050
Chromosome Location	chr1:95560271-95560272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4245664	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4503401	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4578260	0.82[AFR][1000 genomes]
rs7551281	0.81[AFR][1000 genomes]
rs9437686	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9437811	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95554200-95564000	Weak transcription	Osteobl	bone
2	chr1:95558400-95562400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr1:95559000-95561000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:95559200-95560400	Enhancers	K562	blood
5	chr1:95559200-95561600	Weak transcription	A549	lung
6	chr1:95559400-95560400	Weak transcription	HepG2	liver
7	chr1:95560000-95560800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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