Variant report

Variant	rs7551281
Chromosome Location	chr1:95558072-95558073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10128050	0.81[AFR][1000 genomes]
rs12119469	1.00[EUR][1000 genomes]
rs12119701	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12124097	0.82[EUR][1000 genomes]
rs12124647	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12139069	0.97[EUR][1000 genomes]
rs12141083	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12142619	1.00[EUR][1000 genomes]
rs4245664	0.84[AFR][1000 genomes]
rs4847375	0.80[AMR][1000 genomes]
rs6687839	0.81[AFR][1000 genomes]
rs71483843	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7532763	0.81[AFR][1000 genomes]
rs9437686	0.84[AFR][1000 genomes]
rs9437811	0.84[AFR][1000 genomes]
rs9787257	0.82[EUR][1000 genomes]
rs9787343	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95554200-95558400	Weak transcription	HepG2	liver
2	chr1:95554200-95564000	Weak transcription	Osteobl	bone
3	chr1:95555600-95558600	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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