Variant report

Variant	rs71483843
Chromosome Location	chr1:95555353-95555354
allele	AG/GA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12119469	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12119701	0.84[AMR][1000 genomes]
rs12124647	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12139069	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12141083	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12142619	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4847375	0.80[AMR][1000 genomes]
rs7551281	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95551800-95557800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:95552400-95556600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:95553400-95555600	Enhancers	A549	lung
4	chr1:95554200-95558400	Weak transcription	HepG2	liver
5	chr1:95554200-95564000	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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