Variant report

Variant	rs10128954
Chromosome Location	chr12:60225282-60225283
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12315879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12322928	0.85[AMR][1000 genomes]
rs1617129	1.00[AMR][1000 genomes]
rs1693599	1.00[AMR][1000 genomes]
rs1693608	1.00[AMR][1000 genomes]
rs1693610	1.00[AMR][1000 genomes]
rs1693619	1.00[AMR][1000 genomes]
rs17123015	1.00[AMR][1000 genomes]
rs17123025	1.00[AMR][1000 genomes]
rs17123031	1.00[AMR][1000 genomes]
rs17123040	1.00[AMR][1000 genomes]
rs1795882	1.00[AMR][1000 genomes]
rs1795887	1.00[AMR][1000 genomes]
rs1795891	1.00[AMR][1000 genomes]
rs1795892	1.00[AMR][1000 genomes]
rs1795894	1.00[AMR][1000 genomes]
rs1795899	1.00[AMR][1000 genomes]
rs2706281	1.00[AMR][1000 genomes]
rs2706288	1.00[AMR][1000 genomes]
rs2706314	1.00[AMR][1000 genomes]
rs2706315	1.00[AMR][1000 genomes]
rs2706316	1.00[AMR][1000 genomes]
rs2711650	1.00[AMR][1000 genomes]
rs2711653	1.00[AMR][1000 genomes]
rs2711671	1.00[AMR][1000 genomes]
rs2711681	1.00[AMR][1000 genomes]
rs2711685	0.85[AMR][1000 genomes]
rs2711694	1.00[AMR][1000 genomes]
rs57108311	1.00[AMR][1000 genomes]
rs60529673	1.00[AMR][1000 genomes]
rs61052111	1.00[AMR][1000 genomes]
rs73350794	1.00[AMR][1000 genomes]
rs73352606	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352609	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352618	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352638	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9668592	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv899134	chr12:60141518-60263723	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv899135	chr12:60156046-60228610	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60225200-60225400	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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