Variant report

Variant	rs73352638
Chromosome Location	chr12:60243001-60243002
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10128954	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10400423	0.83[AMR][1000 genomes]
rs11173211	0.83[AMR][1000 genomes]
rs11173213	0.83[AMR][1000 genomes]
rs11173216	0.83[AMR][1000 genomes]
rs12315879	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12322928	1.00[AMR][1000 genomes]
rs1617129	0.85[AMR][1000 genomes]
rs1693599	0.85[AMR][1000 genomes]
rs1693608	0.85[AMR][1000 genomes]
rs1693610	0.85[AMR][1000 genomes]
rs1693619	0.85[AMR][1000 genomes]
rs17123015	0.85[AMR][1000 genomes]
rs17123025	0.85[AMR][1000 genomes]
rs17123031	0.85[AMR][1000 genomes]
rs17123040	0.85[AMR][1000 genomes]
rs1795882	0.85[AMR][1000 genomes]
rs1795887	0.85[AMR][1000 genomes]
rs1795891	0.85[AMR][1000 genomes]
rs1795892	0.85[AMR][1000 genomes]
rs1795894	0.85[AMR][1000 genomes]
rs1795899	0.85[AMR][1000 genomes]
rs2706281	0.85[AMR][1000 genomes]
rs2706288	0.85[AMR][1000 genomes]
rs2706314	0.85[AMR][1000 genomes]
rs2706315	0.85[AMR][1000 genomes]
rs2706316	0.85[AMR][1000 genomes]
rs2711650	0.85[AMR][1000 genomes]
rs2711653	0.85[AMR][1000 genomes]
rs2711671	0.85[AMR][1000 genomes]
rs2711681	0.85[AMR][1000 genomes]
rs2711694	0.85[AMR][1000 genomes]
rs57108311	0.85[AMR][1000 genomes]
rs60529673	0.85[AMR][1000 genomes]
rs61052111	0.85[AMR][1000 genomes]
rs73350794	0.85[AMR][1000 genomes]
rs73352606	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73352609	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73352618	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9668592	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv899134	chr12:60141518-60263723	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60239200-60243800	Weak transcription	HUVEC	blood vessel
2	chr12:60242200-60295600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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