Variant report

Variant	rs10129213
Chromosome Location	chr14:24856202-24856203
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24854983..24857784-chr14:24896840..24900485,3	MCF-7	breast:
2	chr14:24856106..24857920-chr14:24860638..24862209,2	K562	blood:
3	chr14:24844734..24846909-chr14:24854625..24856496,2	MCF-7	breast:
4	chr14:24848629..24853303-chr14:24854716..24857758,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100968	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100441	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10141527	0.94[ASN][1000 genomes]
rs10151147	0.92[ASN][1000 genomes]
rs11846223	0.82[CHB][hapmap]
rs2144490	0.82[YRI][hapmap]
rs2243891	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2332326	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2332327	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs954134	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs982975	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24847000-24859600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr14:24847200-24857600	Weak transcription	Ovary	ovary
3	chr14:24847400-24857800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:24847800-24857400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:24848200-24857600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:24848200-24858400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:24849400-24857400	Weak transcription	K562	blood
8	chr14:24851200-24857000	Weak transcription	Placenta	Placenta
9	chr14:24852600-24860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:24854800-24859200	Enhancers	Fetal Intestine Small	intestine
11	chr14:24855400-24859200	Enhancers	Fetal Intestine Large	intestine
12	chr14:24855600-24858200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr14:24855800-24856600	Enhancers	Liver	Liver
14	chr14:24855800-24856600	Bivalent Enhancer	HepG2	liver
15	chr14:24856000-24856400	Enhancers	Stomach Mucosa	stomach
16	chr14:24856000-24856600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:24856000-24856600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:24856000-24856600	Enhancers	Fetal Kidney	kidney
19	chr14:24856000-24856600	Enhancers	Fetal Stomach	stomach
20	chr14:24856200-24856400	Enhancers	Duodenum Mucosa	Duodenum
21	chr14:24856200-24857800	Weak transcription	Fetal Lung	lung
22	chr14:24856200-24858200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links