Variant report

Variant	rs10141527
Chromosome Location	chr14:24841517-24841518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24827418..24850855-chr14:24894884..24913772,127	MCF-7	breast:
2	chr14:24816528..24849574-chr14:24893305..24914155,145	MCF-7	breast:
3	chr14:24837386..24841607-chr14:24843315..24846573,5	K562	blood:
4	chr14:24711870..24713626-chr14:24841435..24843372,2	K562	blood:
5	chr14:24836675..24839120-chr14:24840231..24842410,2	K562	blood:

Variant related genes	Relation type
ENSG00000100441	Chromatin interaction
ENSG00000092330	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000100445	Chromatin interaction
ENSG00000139899	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10129213	0.94[ASN][1000 genomes]
rs10151147	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2243891	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332326	0.85[AFR][1000 genomes]
rs2332327	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982902	0.81[AFR][1000 genomes]
rs954134	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24838200-24850200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:24838400-24843000	Weak transcription	Aorta	Aorta
3	chr14:24838400-24844400	Weak transcription	Esophagus	oesophagus
4	chr14:24838600-24841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:24838600-24842200	Weak transcription	Primary B cells from cord blood	blood
6	chr14:24838600-24842600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:24838600-24844000	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:24838600-24844200	Weak transcription	Spleen	Spleen
9	chr14:24838600-24845600	Weak transcription	Right Atrium	heart
10	chr14:24838600-24846600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:24838800-24841600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:24838800-24841600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:24838800-24841600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr14:24838800-24841600	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:24838800-24841600	Weak transcription	Ovary	ovary
16	chr14:24838800-24841800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:24838800-24841800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:24838800-24842000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr14:24838800-24842000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr14:24838800-24842000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr14:24838800-24842200	Weak transcription	NH-A	brain
22	chr14:24838800-24842200	Genic enhancers	NHLF	lung
23	chr14:24838800-24842600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:24838800-24843400	Genic enhancers	Fetal Stomach	stomach
25	chr14:24838800-24843400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:24838800-24845000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:24838800-24845600	Weak transcription	Brain Germinal Matrix	brain
28	chr14:24838800-24846000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr14:24838800-24846400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:24838800-24846600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr14:24838800-24847600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:24838800-24848000	Weak transcription	Pancreas	Pancrea
33	chr14:24838800-24849600	Weak transcription	Fetal Brain Female	brain
34	chr14:24838800-24850600	Weak transcription	Fetal Kidney	kidney
35	chr14:24839000-24845400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr14:24839000-24845400	Weak transcription	Right Ventricle	heart
37	chr14:24839000-24847000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:24839200-24842600	Genic enhancers	Osteobl	bone
39	chr14:24839200-24843800	Genic enhancers	Fetal Muscle Trunk	muscle
40	chr14:24839400-24842000	Weak transcription	Fetal Intestine Large	intestine
41	chr14:24839400-24843800	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr14:24839600-24841600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr14:24839600-24846800	Weak transcription	Lung	lung
44	chr14:24839600-24847000	Genic enhancers	Fetal Muscle Leg	muscle
45	chr14:24839800-24841600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr14:24839800-24842000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr14:24839800-24843000	Weak transcription	Gastric	stomach
48	chr14:24839800-24843600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr14:24839800-24847200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr14:24840000-24841600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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