Variant report

Variant	rs10129446
Chromosome Location	chr14:80212154-80212155
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1003814	0.81[CHB][hapmap]
rs11624148	0.82[CEU][hapmap]
rs11845174	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12431759	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12435036	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12435075	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12435099	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17764590	0.85[CEU][hapmap]
rs17764746	0.80[CHB][hapmap]
rs1861088	1.00[CEU][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2160081	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2192422	0.85[CEU][hapmap];0.85[AMR][1000 genomes]
rs2192426	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2215839	0.82[CEU][hapmap]
rs4445828	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4899749	1.00[CEU][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55712116	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6574519	0.86[CEU][hapmap]
rs7143192	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7144518	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs7147057	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7148264	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7155520	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7155526	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7158489	0.86[CEU][hapmap]
rs8005873	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8014892	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs8015851	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8018724	1.00[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8022353	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80171400-80232800	Weak transcription	Stomach Smooth Muscle	stomach

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