Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10129446	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11845174	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12431759	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12435036	0.85[AMR][1000 genomes]
rs12435075	0.85[AMR][1000 genomes]
rs12435099	0.85[AMR][1000 genomes]
rs1861088	0.80[AMR][1000 genomes]
rs2160081	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2192422	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2192426	0.80[EUR][1000 genomes]
rs4445828	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4899749	0.80[AMR][1000 genomes]
rs7143192	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7147057	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7148264	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7155520	0.82[AMR][1000 genomes]
rs7155526	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7158489	0.84[AFR][1000 genomes]
rs8005873	0.82[AMR][1000 genomes]
rs8015851	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8018724	0.80[EUR][1000 genomes]
rs8022353	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80171400-80232800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80194000-80198600	Enhancers	Dnd41	blood
3	chr14:80195800-80196800	Enhancers	Brain Germinal Matrix	brain
4	chr14:80196200-80196800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:80196200-80197600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:80196400-80200600	Weak transcription	Aorta	Aorta
7	chr14:80196600-80197200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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