Variant report

Variant	rs10129573
Chromosome Location	chr14:37497708-37497709
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10129329	1.00[MEX][hapmap]
rs10130470	1.00[MEX][hapmap]
rs10130932	1.00[MEX][hapmap]
rs10133401	1.00[MEX][hapmap]
rs10135987	0.85[AMR][1000 genomes]
rs10143714	1.00[MEX][hapmap]
rs10151535	0.85[AMR][1000 genomes]
rs7142930	0.90[MKK][hapmap]
rs7154336	0.87[MKK][hapmap]
rs74045254	0.85[AMR][1000 genomes]
rs8003685	0.90[MKK][hapmap]
rs8007409	0.91[ASW][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs8018957	0.87[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10129573	GPR183	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37494800-37503400	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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