Variant report

Variant	rs10129640
Chromosome Location	chr14:64660614-64660615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10047818	1.00[YRI][hapmap]
rs10132508	0.80[AFR][1000 genomes]
rs10133691	0.80[AFR][1000 genomes]
rs10134809	0.80[AFR][1000 genomes]
rs10143846	1.00[YRI][hapmap]
rs10145525	0.80[AFR][1000 genomes]
rs10147523	1.00[AFR][1000 genomes]
rs10148142	0.84[AFR][1000 genomes]
rs2039475	0.80[AFR][1000 genomes]
rs28375639	0.80[AFR][1000 genomes]
rs28450294	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv902021	chr14:64647646-64715794	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64600600-64667400	Weak transcription	Stomach Mucosa	stomach
2	chr14:64636800-64662600	Weak transcription	Psoas Muscle	Psoas
3	chr14:64637400-64663600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:64640000-64663400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:64645200-64661000	Weak transcription	Primary B cells from cord blood	blood
6	chr14:64645800-64661400	Weak transcription	Small Intestine	intestine
7	chr14:64645800-64663600	Weak transcription	Colonic Mucosa	Colon
8	chr14:64650800-64661400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:64650800-64661600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr14:64650800-64663200	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr14:64650800-64671800	Strong transcription	Liver	Liver
12	chr14:64651600-64662600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr14:64651800-64661000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:64652000-64661400	Weak transcription	Fetal Kidney	kidney
15	chr14:64652000-64662800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:64652800-64666200	Strong transcription	Dnd41	blood
17	chr14:64653000-64660800	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr14:64653000-64661200	Strong transcription	Fetal Intestine Large	intestine
19	chr14:64653000-64664000	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr14:64653600-64661200	Weak transcription	Gastric	stomach
21	chr14:64653600-64663400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr14:64653800-64661400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr14:64655800-64663400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr14:64655800-64663600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:64656400-64663400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:64657600-64661200	Weak transcription	Spleen	Spleen
27	chr14:64657600-64663400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr14:64657600-64663400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr14:64657800-64662600	Weak transcription	Fetal Brain Male	brain
30	chr14:64657800-64662600	Weak transcription	Fetal Brain Female	brain
31	chr14:64657800-64663600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:64658200-64661200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr14:64658200-64663200	Weak transcription	Thymus	Thymus
34	chr14:64658200-64667000	Weak transcription	Esophagus	oesophagus
35	chr14:64658400-64661000	Weak transcription	Fetal Thymus	thymus
36	chr14:64658400-64661200	Weak transcription	GM12878-XiMat	blood
37	chr14:64658600-64661000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:64658600-64661400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr14:64658600-64663200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:64659000-64661000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:64659000-64661000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr14:64659000-64661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr14:64659000-64662000	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr14:64659200-64661200	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr14:64659200-64662600	Weak transcription	Brain Germinal Matrix	brain
46	chr14:64659200-64663400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr14:64659200-64663400	Weak transcription	NH-A	brain
48	chr14:64659200-64663400	Weak transcription	NHLF	lung
49	chr14:64659200-64663600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr14:64659400-64661200	Enhancers	H1 Cell Line	embryonic stem cell

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