Variant report

Variant	rs2039475
Chromosome Location	chr14:64608756-64608757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10129640	0.80[AFR][1000 genomes]
rs10132508	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10133691	0.81[AFR][1000 genomes]
rs10134809	0.81[AFR][1000 genomes]
rs10145525	1.00[AFR][1000 genomes]
rs10147523	0.80[AFR][1000 genomes]
rs10148142	0.85[AFR][1000 genomes]
rs10148617	0.87[AFR][1000 genomes]
rs17179194	1.00[CHB][hapmap]
rs17751301	1.00[CHB][hapmap]
rs2275014	1.00[MEX][hapmap]
rs28375639	1.00[AFR][1000 genomes]
rs28445377	0.95[AFR][1000 genomes]
rs28450294	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv564906	chr14:64595673-64612858	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64544000-64616200	Strong transcription	Primary T cells fromperipheralblood	blood
2	chr14:64567200-64616200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr14:64577800-64616200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr14:64578200-64649000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:64578600-64649000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:64579600-64611000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr14:64581400-64613400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:64581800-64650400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:64583400-64649000	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr14:64583600-64611800	Strong transcription	Dnd41	blood
12	chr14:64583600-64638000	Strong transcription	Placenta	Placenta
13	chr14:64584400-64616000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr14:64584600-64623000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:64585400-64613400	Weak transcription	HSMM	muscle
16	chr14:64585600-64615600	Strong transcription	Duodenum Mucosa	Duodenum
17	chr14:64585800-64614400	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:64586000-64649000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr14:64586400-64631800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr14:64586600-64614000	Weak transcription	Fetal Heart	heart
21	chr14:64588800-64611600	Strong transcription	Primary T cells from cord blood	blood
22	chr14:64590200-64634000	Weak transcription	HepG2	liver
23	chr14:64590400-64608800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr14:64591000-64649000	Strong transcription	Liver	Liver
25	chr14:64593600-64609000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:64593600-64615800	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr14:64593800-64608800	Weak transcription	Colon Smooth Muscle	Colon
28	chr14:64593800-64613400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr14:64594600-64609200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr14:64594600-64653200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr14:64594800-64619600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:64596400-64653000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr14:64597000-64608800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr14:64597000-64609000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr14:64597000-64609200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr14:64597000-64626400	Weak transcription	Psoas Muscle	Psoas
37	chr14:64600600-64667400	Weak transcription	Stomach Mucosa	stomach
38	chr14:64602200-64614200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:64603200-64611600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:64603400-64610800	Strong transcription	Left Ventricle	heart
41	chr14:64603600-64610600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr14:64603600-64610800	Strong transcription	Fetal Muscle Leg	muscle
43	chr14:64603600-64613400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr14:64603600-64614400	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr14:64603600-64616400	Strong transcription	Fetal Intestine Large	intestine
46	chr14:64604200-64611600	Strong transcription	GM12878-XiMat	blood
47	chr14:64604400-64611200	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr14:64604600-64610400	Strong transcription	Fetal Thymus	thymus
49	chr14:64605000-64611600	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr14:64605200-64609000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links