Variant report

Variant	rs28445377
Chromosome Location	chr14:64639296-64639297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10132508	0.95[AFR][1000 genomes]
rs10145525	0.95[AFR][1000 genomes]
rs10148142	0.81[AFR][1000 genomes]
rs10148617	0.83[AFR][1000 genomes]
rs2039475	0.95[AFR][1000 genomes]
rs28375639	0.95[AFR][1000 genomes]
rs28450294	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:64578200-64649000	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:64578600-64649000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:64581800-64650400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:64583400-64649000	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr14:64586000-64649000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:64591000-64649000	Strong transcription	Liver	Liver
8	chr14:64594600-64653200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:64596400-64653000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:64600600-64667400	Weak transcription	Stomach Mucosa	stomach
11	chr14:64606200-64647200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr14:64609800-64653000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr14:64610600-64651000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr14:64612600-64640000	Strong transcription	Dnd41	blood
15	chr14:64612800-64640000	Strong transcription	Primary T cells from cord blood	blood
16	chr14:64614800-64644400	Weak transcription	HSMM	muscle
17	chr14:64617600-64649000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:64617800-64649000	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr14:64620000-64651200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:64620400-64653000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr14:64624200-64640400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:64624800-64645800	Strong transcription	Fetal Intestine Large	intestine
23	chr14:64625000-64649000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:64625000-64658000	Weak transcription	HUVEC	blood vessel
25	chr14:64625400-64640800	Strong transcription	Fetal Stomach	stomach
26	chr14:64627200-64660400	Weak transcription	Fetal Heart	heart
27	chr14:64627400-64646400	Weak transcription	Brain Anterior Caudate	brain
28	chr14:64627800-64641000	Strong transcription	Fetal Intestine Small	intestine
29	chr14:64628000-64639600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr14:64628000-64640000	Strong transcription	Left Ventricle	heart
31	chr14:64628200-64640200	Strong transcription	Fetal Muscle Trunk	muscle
32	chr14:64628200-64649000	Strong transcription	Duodenum Mucosa	Duodenum
33	chr14:64628600-64639600	Strong transcription	Fetal Brain Female	brain
34	chr14:64628600-64640200	Strong transcription	Adipose Nuclei	Adipose
35	chr14:64628600-64648800	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:64628800-64639600	Strong transcription	Fetal Muscle Leg	muscle
37	chr14:64628800-64640000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:64628800-64640000	Strong transcription	Thymus	Thymus
39	chr14:64628800-64640200	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr14:64631400-64640200	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr14:64632200-64640800	Strong transcription	Colonic Mucosa	Colon
42	chr14:64632600-64639600	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr14:64633600-64640200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr14:64633600-64640200	Strong transcription	Brain Germinal Matrix	brain
45	chr14:64633800-64640200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr14:64634000-64639600	Strong transcription	Spleen	Spleen
47	chr14:64634000-64640200	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr14:64634400-64639400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr14:64634600-64640200	Strong transcription	Fetal Lung	lung
50	chr14:64634600-64648800	Weak transcription	H1 Cell Line	embryonic stem cell

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