Variant report

Variant	rs1013017
Chromosome Location	chr5:167594265-167594266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10516044	0.86[AFR][1000 genomes]
rs13153393	0.86[AFR][1000 genomes]
rs1560653	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17663412	1.00[ASW][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2337129	1.00[ASW][hapmap];0.89[MKK][hapmap]
rs34962507	1.00[AFR][1000 genomes]
rs34978256	1.00[AFR][1000 genomes]
rs35359043	1.00[AFR][1000 genomes]
rs35982759	1.00[AFR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167586000-167594400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:167587600-167598000	Weak transcription	Right Atrium	heart
3	chr5:167589000-167599600	Weak transcription	Fetal Heart	heart
4	chr5:167589000-167605400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:167590000-167596000	Weak transcription	Right Ventricle	heart
6	chr5:167590000-167601600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:167590800-167594400	Enhancers	Brain Germinal Matrix	brain
8	chr5:167590800-167594600	Enhancers	Fetal Muscle Leg	muscle
9	chr5:167591000-167594600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:167591400-167594600	Enhancers	Primary hematopoietic stem cells	blood
11	chr5:167591400-167594600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:167591800-167594600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr5:167592000-167594400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:167592200-167594600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr5:167592200-167594800	Enhancers	Primary T cells from cord blood	blood
16	chr5:167592400-167594600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:167592400-167626000	Weak transcription	HSMM	muscle
18	chr5:167592600-167594400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:167592600-167596000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:167592600-167596000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:167592600-167596200	Weak transcription	Left Ventricle	heart
22	chr5:167592600-167596400	Weak transcription	Fetal Lung	lung
23	chr5:167593000-167594800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:167593200-167594600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:167593200-167596200	Weak transcription	Brain Anterior Caudate	brain
26	chr5:167593200-167607800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:167593400-167604000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:167593600-167594600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr5:167593600-167594800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr5:167593600-167596000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr5:167593600-167601200	Weak transcription	Fetal Brain Male	brain
32	chr5:167593800-167601200	Strong transcription	NHEK	skin
33	chr5:167593800-167602200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr5:167594200-167596800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links